Compute positivity of a single phenotype
compute_positivity(csd, phenotype, positivity)Cell seg data to use. This should already have been filtered for the slides or fields of interest.
A phenotype selector. This will be passed to
select_rows.
A one-sided formula giving the positivity expression to evaluate.
A data frame with columns for count (total number of cells of the given phenotype), positive (count of positive cells) and fraction (fraction of positive cells).
Other aggregation functions:
compute_density_from_cell_summary(),
compute_density_from_table(),
compute_h_score_from_score_data(),
compute_h_score(),
compute_mean_expression_many(),
compute_mean_expression(),
compute_positivity_many(),
count_phenotypes(),
counts_to_percents()