The staining consistency report measures variation in the mean expression of a single marker across multiple images. It is used to assess consistency of staining within or across staining runs.
When analyzing slides from a single staining run, this report can highlight inconsistent staining and suggest that autostainer maintenance is needed.
When analyzing slides from multiple runs of an assay, the report can indicate changes in assay performance over time.
The input to this report is a merged cell seg data file from inForm containing data about the samples to measure.
Click the “Browse” button in the “Select Merge Data” section of the GUI. Use the file selection dialog to select the file containing your merge data.
Select the marker and cell compartment for the report from the drop-down menus.
In general, a good result will have a relatively narrow range of mean values, limited outliers beyond the ±1 SD range, and a CV less than 15%.
A wide range of mean values, outliers far outside the ±1 SD range, or CV greater than 15% indicates a possible problem.
If the slides are from a single staining run, the autostainer may need maintenance.
If the slides are from multiple runs, the variation may be due to one of these causes:
This analysis assumes that assay performance has been monitored over time under the same operating conditions, as much as is practicable.