Create a summary report for a cell seg data file

Source: R/reports.R

Creates an HTML report summarizing the slides, fields and phenotypes in a single cell seg data file.

write_summary_report(
  csd_path = NULL,
  csd = NULL,
  dataset_name = NULL,
  output_path
)

Arguments

csd_path

Path to cell seg data file, or NULL.

csd

Cell seg table, or NULL.

dataset_name

Descriptive name of the dataset.

output_path

Path to write the resulting HTML file.