Create an UpSet plot showing the phenotype combinations present in data.

Source: R/upset_plot.R

See http://caleydo.org/tools/upset/ for an explanation of the plot.

upset_plot(csd, expected = NULL)

Arguments

csd

A cell seg table with multiple Phenotype columns

expected

Optional vector of expected phenotypes. If provided, these will be highlighted in the plot.

Value

An upset plot created with UpSetR::upset.