Create reports showing mean expression of top and bottom cells

Create reports showing mean expression of top and bottom cells

mean_of_top_and_bottom_cells_report(
  merge_file,
  config_file,
  by,
  tissue_categories,
  adjacent_max
)

Arguments

merge_file

Path to a merged or consolidated cell seg data file

config_file

Path to a configuration file containing column names in the merge file, one name per line.

by

Column to aggregate by, e.g. "Slide ID" or "Annotation ID".

tissue_categories

Tissue categories to report, or NULL to use all.

adjacent_max

The maximum ratio between expression of adjacent fluors.

Value

None